Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qkm GEN Estrogen receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qkm GENEstrogen receptor beta / 1.038
1x7j GENEstrogen receptor beta / 0.945
1zaf 789Estrogen receptor beta / 0.880
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4iw6 1GUEstrogen receptor / 0.724
1u9e 397Estrogen receptor beta / 0.721
2j7y E3OEstrogen receptor beta / 0.697
4iv2 1GREstrogen receptor / 0.693
2nv7 555Estrogen receptor beta / 0.692
1yye 196Estrogen receptor beta / 0.690
2jj3 JJ3Estrogen receptor beta / 0.688
4dma 0L8Estrogen receptor / 0.687
1x78 244Estrogen receptor beta / 0.681
1yy4 4NAEstrogen receptor beta / 0.679
2g5o DRQEstrogen receptor / 0.677
4e5f 0N7Polymerase acidic protein / 0.660
4k7a DHTAndrogen receptor / 0.652
2piq DHTAndrogen receptor / 0.650