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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qiq ACC Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.988
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.959
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.932
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.923
1w06 W05Isopenicillin N synthase 1.21.3.1 0.921
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.918
1obn ASVIsopenicillin N synthase 1.21.3.1 0.909
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.904
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.900
1blz ACVIsopenicillin N synthase 1.21.3.1 0.881
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.874
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.862
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.846
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.840
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.838
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.836
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.820
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.804
2vbd V10Isopenicillin N synthase 1.21.3.1 0.801
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.800
1odn APVIsopenicillin N synthase 1.21.3.1 0.778
2vcm M11Isopenicillin N synthase 1.21.3.1 0.769
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.745
3zky WT4Isopenicillin N synthase 1.21.3.1 0.715
3zku HCVIsopenicillin N synthase 1.21.3.1 0.676
3lnc 5GPGuanylate kinase / 0.675
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.670
4bqs K2QShikimate kinase 2.7.1.71 0.670
1ex7 5GPGuanylate kinase 2.7.4.8 0.660
1arg PPDAspartate aminotransferase 2.6.1.1 0.657
3drc MTXDihydrofolate reductase 1.5.1.3 0.656
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.656
1uuo BRFDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.654
3ntz 3TZDihydrofolate reductase 1.5.1.3 0.653
3och 2MXDihydrofolate reductase 1.5.1.3 0.653
1qzf FOLBifunctional dihydrofolate reductase-thymidylate synthase / 0.652
4i1n FOLDihydrofolate reductase 1.5.1.3 0.651
1dhf FOLDihydrofolate reductase 1.5.1.3 0.650
1ra3 MTXDihydrofolate reductase 1.5.1.3 0.650