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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qip GNB Lactoylglutathione lyase 4.4.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qip GNBLactoylglutathione lyase 4.4.1.5 1.209
1fro GSBLactoylglutathione lyase 4.4.1.5 0.863
1bh5 GTXLactoylglutathione lyase 4.4.1.5 0.844
1qin GIPLactoylglutathione lyase 4.4.1.5 0.774
2yi5 YI5Heat shock protein HSP 90-alpha / 0.654
4yau 2AMNADPH--cytochrome P450 reductase / 0.654
1toi HCIAspartate aminotransferase 2.6.1.1 0.653
4kfj FOLDihydrofolate reductase 1.5.1.3 0.652
4yal 2AMNADPH--cytochrome P450 reductase / 0.652