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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qh0 FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.368
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.340
1que FADFerredoxin--NADP reductase 1.18.1.2 1.325
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.286
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.272
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.269
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.264
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.257
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.247
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.245
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.238
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.237
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.234
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.233
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.230
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.222
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.220
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.214
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.211
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.208
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.207
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.205
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.201
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.194
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.192
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.191
3vo2 FADFerredoxin--NADP reductase / 1.191
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.188
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.184
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.179
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.176
1gaw FADFerredoxin / 1.168
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.145
3w5u FADFerredoxin / 1.118
1gaq FADFerredoxin / 1.093
2rc6 FADFerredoxin--NADP reductase / 1.093
2rc5 FADFerredoxin--NADP reductase / 1.088
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.067
1sm4 FADFerredoxin--NADP reductase / 1.059
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.029
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.022
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.998
4yaf FADNADPH--cytochrome P450 reductase / 0.995
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.984
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.976
3qfc FADNADPH--cytochrome P450 reductase / 0.974
3qft FADNADPH--cytochrome P450 reductase / 0.967
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.963
3ojw FADNADPH--cytochrome P450 reductase / 0.959
1ja1 FADNADPH--cytochrome P450 reductase / 0.957
3qfs FADNADPH--cytochrome P450 reductase / 0.945
3qe2 FADNADPH--cytochrome P450 reductase / 0.938
1tll FADNitric oxide synthase, brain 1.14.13.39 0.932
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.918
3qfr FADNADPH--cytochrome P450 reductase / 0.917
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.916
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.908
1cqx FADFlavohemoprotein / 0.907
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.899
4yau FADNADPH--cytochrome P450 reductase / 0.896
4y9u FADNADPH--cytochrome P450 reductase / 0.891
1j9z FADNADPH--cytochrome P450 reductase / 0.889
1ja0 FADNADPH--cytochrome P450 reductase / 0.883
4y7c FADNADPH--cytochrome P450 reductase / 0.879
2bf4 FADNADPH--cytochrome P450 reductase / 0.877
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.875
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.857
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.855
1amo FADNADPH--cytochrome P450 reductase / 0.840
2eix FADNADH-cytochrome b5 reductase / 0.831
2pia FMNPhthalate dioxygenase reductase / 0.822
3ojx FADNADPH--cytochrome P450 reductase / 0.819
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.817
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.816
2bpo FADNADPH--cytochrome P450 reductase / 0.811
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.806
4y9r FADNADPH--cytochrome P450 reductase / 0.806
1gvh FADFlavohemoprotein / 0.798
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.786
2gpj FADSiderophore-interacting protein / 0.784
4fk8 FADFerredoxin--NADP reductase / 0.784
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.764
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.763
4yao FADNADPH--cytochrome P450 reductase / 0.760
2bgj FADNADPH:ferredoxin reductase / 0.742
2bn4 FADNADPH--cytochrome P450 reductase / 0.740
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.729
3fpk FADFerredoxin-NADP reductase / 0.710
4k1x FADNADPH:ferredoxin reductase / 0.709
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
3r5y F42Uncharacterized protein / 0.688
2bra FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.687
2dji FADPyruvate oxidase / 0.687
3in6 FMNUncharacterized protein / 0.687
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.686
2ptf FMNUncharacterized protein MTH_863 / 0.679
3hjk FADVivid PAS protein VVD / 0.679
5j60 FADThioredoxin reductase / 0.677
1eje FMNProtein MTH_152 / 0.673
1wlk FMNFMN-binding protein / 0.672
3e4v FMNUncharacterized protein / 0.671
1usc FMNMonooxygenase / 0.670
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.669
4c3y FAD3-ketosteroid dehydrogenase / 0.666
3a6q FMNFMN-binding protein / 0.663
2yg6 FADPutrescine oxidase / 0.662
3pft FMNFlavin reductase / 0.660
2y48 FADLysine-specific histone demethylase 1A 1 0.659
2idv M7GEukaryotic translation initiation factor 4E-1 / 0.658
3a6r FMNFMN-binding protein / 0.658
2bgi FADNADPH:ferredoxin reductase / 0.657
3fg2 FADPutative rubredoxin reductase / 0.656
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.655
2vnh FADNADPH:ferredoxin reductase / 0.654
3a20 FMNFMN-binding protein / 0.654
2dvl FADAcyl-CoA dehydrogenase / 0.653
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.653
2vnk FADNADPH:ferredoxin reductase / 0.652
2gv8 FADThiol-specific monooxygenase 1.14.13 0.651
3mzi FMNActivator of photopigment and puc expression / 0.650
3vy2 FMNFMN-binding protein / 0.650