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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qf2 TI3 Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qf2 TI3Thermolysin 3.4.24.27 0.891
3t74 UBYThermolysin 3.4.24.27 0.730
3t8c UBWThermolysin 3.4.24.27 0.719
3fgd BYAThermolysin 3.4.24.27 0.712
3t87 UBZThermolysin 3.4.24.27 0.691
3t8d UBVThermolysin 3.4.24.27 0.690
3t8h UBSThermolysin 3.4.24.27 0.690
4d9w X32Thermolysin 3.4.24.27 0.677
1r1j OIRNeprilysin / 0.674
1u4g HPIElastase 3.4.24.26 0.672
4h57 0PJThermolysin 3.4.24.27 0.668
6tmn 0PIThermolysin 3.4.24.27 0.666
3fv4 1U4Thermolysin 3.4.24.27 0.660