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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qbu 846 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qbu 846Gag-Pol polyprotein 3.4.23.16 1.360
1bv7 XV6Gag-Pol polyprotein 3.4.23.16 0.907
1bv9 XV6Gag-Pol polyprotein 3.4.23.16 0.874
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.836
1mes DMPGag-Pol polyprotein 3.4.23.16 0.802
1mer DMQGag-Pol polyprotein 3.4.23.16 0.766
1meu DMPGag-Pol polyprotein 3.4.23.16 0.766
1hvk A79Gag-Pol polyprotein / 0.765
1qbs DMPGag-Pol polyprotein 3.4.23.16 0.765
1bwa XV6Gag-Pol polyprotein 3.4.23.16 0.737
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.732
1ajx AH1Gag-Pol polyprotein 3.4.23.16 0.729
4hdp G52Gag-Pol polyprotein 3.4.23.16 0.727
1ajv NMBGag-Pol polyprotein 3.4.23.16 0.722
1qbr XV6Gag-Pol polyprotein 3.4.23.16 0.693
2qd8 065Gag-Pol polyprotein 3.4.23.16 0.691
3em3 478Gag-Pol polyprotein 3.4.23.16 0.691
2hs2 017Protease / 0.688
3vfa 031Gag-Pol polyprotein 3.4.23.16 0.686
3st5 G89Gag-Pol polyprotein 3.4.23.16 0.685
1bve DMPGag-Pol polyprotein 3.4.23.16 0.683
3bxr DRRGag-Pol polyprotein 3.4.23.16 0.682
1z1r HBHGag-Pol polyprotein 3.4.23.16 0.680
3mws 017Pol protein / 0.679
4dqe 017Gag-Pol polyprotein / 0.679
4heg G52Gag-Pol polyprotein 3.4.23.16 0.679
1t7k BH0Gag-Pol polyprotein 3.4.23.16 0.675
2hs1 017Protease / 0.672
4q1x 017Gag-Pol polyprotein 3.4.23.16 0.668
4njs G08Protease / 0.667
3gi5 K62Gag-Pol polyprotein / 0.665
4djo MK5Pol polyprotein / 0.665
4k4p 3TLGag-Pol polyprotein / 0.663
9hvp 0E9Gag-Pol polyprotein / 0.661
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.660
3ttp 017Gag-Pol polyprotein 3.4.23.16 0.660
1hii C20Gag-Pol polyprotein / 0.659
3sa5 A69Protease / 0.654
2ieo 017Protease / 0.653
2wkz 5AHGag-Pol polyprotein / 0.653
3oxw 017Gag-Pol polyprotein 3.4.23.16 0.652
3s43 478Protease / 0.652
2f8g 017Gag-Pol polyprotein 3.4.23.16 0.650
3sa4 F72Protease / 0.650