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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q6n P90 Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q6n P90Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 1.510
1q6t 600Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 1.039
1q6p 213Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 1.030
2fjn 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 1.029
1q6s 214Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 1.000
2fjm 073Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.867
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.660
4ge5 A89Tyrosine-protein phosphatase non-receptor type 9 3.1.3.48 0.659
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.656
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.654
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.653
4yaw 2AMNADPH--cytochrome P450 reductase / 0.651