Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q65 BHB Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q65 BHBQueuine tRNA-ribosyltransferase 2.4.2.29 0.923
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.823
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.758
4fsa 0V3Queuine tRNA-ribosyltransferase 2.4.2.29 0.739
3gc5 2MQQueuine tRNA-ribosyltransferase 2.4.2.29 0.700
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.689
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.685
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.685
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.678
4e5f 0N7Polymerase acidic protein / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
3ge7 AFQQueuine tRNA-ribosyltransferase 2.4.2.29 0.650