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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q0b NAT Kinesin-like protein KIF11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q0b NATKinesin-like protein KIF11 / 0.918
1x88 NATKinesin-like protein KIF11 / 0.912
2x7c KZ9Kinesin-like protein KIF11 / 0.866
3k5e K5EKinesin-like protein KIF11 / 0.851
2ieh MOYKinesin-like protein KIF11 / 0.806
2x7d EGBKinesin-like protein KIF11 / 0.791
3k3b L31Kinesin-like protein KIF11 / 0.790
2x7e X7EKinesin-like protein KIF11 / 0.756