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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pxj CK2 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pxj CK2Cyclin-dependent kinase 2 2.7.11.22 0.847
4fkl CK2Cyclin-dependent kinase 2 2.7.11.22 0.726
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.678
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.663
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.654
2hen ADPEphrin type-B receptor 2 2.7.10.1 0.654
3q5i ANPProtein kinase, putative / 0.651
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.650