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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pj7 FFO Dimethylglycine oxidase 1.5.3.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pj7 FFODimethylglycine oxidase 1.5.3.10 1.013
3gsi THGDimethylglycine oxidase 1.5.3.10 0.760
1woo THGAminomethyltransferase / 0.745
1wop FFOAminomethyltransferase / 0.740
4paa THGDimethylglycine dehydrogenase, mitochondrial 1.5.8.4 0.699