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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1php ADP Phosphoglycerate kinase 2.7.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1php ADPPhosphoglycerate kinase 2.7.2.3 1.085
2wzb ADPPhosphoglycerate kinase 1 2.7.2.3 0.761
2xe7 ADPPhosphoglycerate kinase 1 2.7.2.3 0.744
3zoz ADPPhosphoglycerate kinase 1 2.7.2.3 0.739
4ng4 ADPPhosphoglycerate kinase / 0.733
2paa ATPPhosphoglycerate kinase 2 2.7.2.3 0.673
2zgv ADPPhosphoglycerate kinase 1 2.7.2.3 0.672
3b05 IPEIsopentenyl-diphosphate delta-isomerase / 0.657
2x0q ATPAlcaligin biosynthesis protein / 0.652
3a58 GNPGTP-binding protein RHO1 / 0.652
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.652
4g0n GNPGTPase HRas / 0.652
4p5f AR6Inosine-uridine nucleoside N-ribohydrolase / 0.650