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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pg0 MOD Methionine--tRNA ligase 6.1.1.10

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pg0 MODMethionine--tRNA ligase 6.1.1.10 1.113
1pfy MSPMethionine--tRNA ligase 6.1.1.10 1.055
2ct8 MSPMethionine--tRNA ligase 6.1.1.10 0.856
3kfl ME8Putative methionyl-tRNA synthetase / 0.767
5ah5 LSSLeucine--tRNA ligase / 0.739
3ziu LSSLeucyl-tRNA synthetase / 0.735
1pg2 ADNMethionine--tRNA ligase 6.1.1.10 0.699
2x1l ADNMethionine--tRNA ligase / 0.656
3afh GSUGlutamate--tRNA ligase 2 / 0.655