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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pdh FAS p-hydroxybenzoate hydroxylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1pdh FASp-hydroxybenzoate hydroxylase / 1.343
1k0j FADp-hydroxybenzoate hydroxylase / 0.975
1k0l FADp-hydroxybenzoate hydroxylase / 0.966
1d7l RFLp-hydroxybenzoate hydroxylase / 0.937
2xdo FADTetX family tetracycline inactivation enzyme / 0.896
3oz2 FADDigeranylgeranylglycerophospholipid reductase / 0.867
4k5r FADOxygenase / 0.867
4hb9 FADUncharacterized protein / 0.863
5eow FAD6-hydroxynicotinate 3-monooxygenase 1.14.13.114 0.863
4k2x FADPolyketide oxygenase/hydroxylase / 0.851
2x3n FADProbable FAD-dependent monooxygenase / 0.827
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.825
1ges FADGlutathione reductase 1.8.1.7 0.823
4j2w FADKynurenine 3-monooxygenase / 0.823
4a99 FADTetX family tetracycline inactivation enzyme / 0.821
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.815
2vou FAD2,6-dihydroxypyridine 3-monooxygenase 1.14.13.10 0.813
2yqu FADDihydrolipoyl dehydrogenase / 0.813
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.806
3fbs FADOxidoreductase / 0.799
2yg4 FADPutrescine oxidase / 0.797
2eq6 FADDihydrolipoyl dehydrogenase / 0.795
3ish FADThioredoxin reductase 1.8.1.9 0.795
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.795
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.794
1ger FADGlutathione reductase 1.8.1.7 0.792
4j34 FADKynurenine 3-monooxygenase / 0.783
5buk FADFADH2-dependent halogenase / 0.783
4fx9 FADCoenzyme A disulfide reductase 1.8.1.14 0.782
4j33 FADKynurenine 3-monooxygenase / 0.781
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.779
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.778
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.777
4bjz FADProbable salicylate monooxygenase / 0.774
3icr FADCoenzyme A disulfide reductase / 0.773
1mo9 FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.772
2qa1 FADPgaE / 0.767
3g5s FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.767
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.766
3rha FDAPutrescine oxidase / 0.766
4icy FADPgaE / 0.766
4jn9 FADDepH / 0.765
4nte FADDepH / 0.765
1geu FADGlutathione reductase 1.8.1.7 0.764
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.763
1v59 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.762
3rp8 FADFAD-dependent urate hydroxylase / 0.762
4j36 FADKynurenine 3-monooxygenase / 0.762
2eq9 FADDihydrolipoyl dehydrogenase / 0.758
3cge FADCoenzyme A disulfide reductase / 0.757
3ics FADCoenzyme A disulfide reductase / 0.757
4nzh FADL-ornithine N(5)-monooxygenase / 0.756
4tlz FADKtzI / 0.754
2eq8 FADDihydrolipoyl dehydrogenase / 0.752
3ict FADCoenzyme A disulfide reductase / 0.752
3p9u FADTetX family tetracycline inactivation enzyme / 0.752
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.751
2qa2 FADPolyketide oxygenase CabE / 0.751
1fl2 FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.750
3atq FDAConserved Archaeal protein / 0.750
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.749
4em4 FADCoenzyme A disulfide reductase / 0.748
4gcm FADThioredoxin reductase 1.8.1.9 0.748
4guv FADTetX family tetracycline inactivation enzyme / 0.748
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.747
1get FADGlutathione reductase 1.8.1.7 0.745
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.745
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.744
2q0l FADThioredoxin reductase 1.8.1.9 0.744
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.743
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.743
2v6o FADThioredoxin glutathione reductase / 0.743
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.742
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.742
3urh FADDihydrolipoyl dehydrogenase / 0.741
4eqw FADCoenzyme A disulfide reductase / 0.740
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.739
3g5q FADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO / 0.739
4tlx FDAKtzI / 0.739
4cnk FADL-amino acid oxidase / 0.737
4j56 FADThioredoxin reductase 2 1.8.1.9 0.737
4ntd FADThioredoxin reductase / 0.736
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.735
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.735
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.733
3sz0 FADSulfide-quinone reductase / 0.733
4a6n FADTetX family tetracycline inactivation enzyme / 0.732
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.732
2q7v FADThioredoxin reductase / 0.731
2yg5 FADPutrescine oxidase / 0.731
2ym1 FADPhenylacetone monooxygenase 1.14.13.92 0.731
4gut FADLysine-specific histone demethylase 1B 1 0.730
4x4j FADPutative oxygenase / 0.730
3alj FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.729
1nhr FADNADH peroxidase 1.11.1.1 0.728
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.728
3r9u FADThioredoxin reductase / 0.728
4fk1 FADPutative thioredoxin reductase / 0.728
5fs7 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.728
4gus FADLysine-specific histone demethylase 1B 1 0.727
3ef6 FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.726
3ihg FADAklavinone 12-hydroxylase RdmE / 0.726
4jq9 FADDihydrolipoyl dehydrogenase / 0.726
2bab FADPutative aminooxidase / 0.725
4b69 FADL-ornithine N(5)-monooxygenase / 0.723
5dbj FADFADH2-dependent halogenase PltA / 0.723
2xve FADPutative flavin-containing monooxygenase / 0.722
5cku FADL-ornithine N(5)-monooxygenase / 0.722
2dki FAD3-hydroxybenzoate 4-monooxygenase 1.14.13.23 0.721
2zbw FADFerredoxin--NADP reductase / 0.721
3dgz FADThioredoxin reductase 2, mitochondrial 1.8.1.9 0.721
2rgj FADFlavin-containing monooxygenase / 0.719
3cgb FADCoenzyme A disulfide reductase / 0.719
4z24 FADPutative GMC-type oxidoreductase R135 1 0.718
4mo2 FADUDP-galactopyranose mutase / 0.717
1nhs FADNADH peroxidase 1.11.1.1 0.716
2jb1 FADL-amino acid oxidase / 0.716
2npx FADNADH peroxidase 1.11.1.1 0.716
3nix FADFlavoprotein/dehydrogenase / 0.715
3uoy FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.715
2rab FADGlutathione amide reductase / 0.713
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.713
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.712
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.712
2b9y FADPutative aminooxidase / 0.711
3cgd FADCoenzyme A disulfide reductase / 0.711
2hqm FADGlutathione reductase 1.8.1.7 0.709
3klj FADNADH-rubredoxin oxidoreductase 1.18.1.1 0.709
4b63 FADL-ornithine N(5)-monooxygenase / 0.709
1f8w FADNADH peroxidase 1.11.1.1 0.708
2yg3 FADPutrescine oxidase / 0.708
3uox FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.708
4tm1 FDAKtzI / 0.708
4ykg FADAlkyl hydroperoxide reductase subunit F 1.8.1 0.708
2vqb FADPutative flavin-containing monooxygenase / 0.707
2q0k FADThioredoxin reductase 1.8.1.9 0.706
3cgc FADCoenzyme A disulfide reductase / 0.706
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.706
4eqs FADCoenzyme A disulfide reductase / 0.706
2r9z FADGlutathione amide reductase / 0.705
3c4a FADProtodeoxyviolaceinate monooxygenase 1 0.704
3uov FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.704
2wow FADTrypanothione reductase / 0.702
4bk2 FADProbable salicylate monooxygenase / 0.702
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.700
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.699
4dna FADProbable glutathione reductase / 0.699
4em3 FADCoenzyme A disulfide reductase / 0.699
1gv4 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.698
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.696
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.695
1npx FADNADH peroxidase 1.11.1.1 0.695
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.695
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.695
3fg2 FADPutative rubredoxin reductase / 0.694
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.694
3we0 FADLysine 2-monooxygenase / 0.694
2xvf FADPutative flavin-containing monooxygenase / 0.693
4tm0 FADKtzI / 0.693
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.692
2tmd ADPTrimethylamine dehydrogenase 1.5.8.2 0.692
3kve FADL-amino-acid oxidase / 0.692
4h4p FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.692
3t14 FADSulfide-quinone reductase / 0.691
3t2k FADSulfide-quinone reductase / 0.691
1zx9 FADMercuric reductase 1.16.1.1 0.690
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.690
4eqx FADCoenzyme A disulfide reductase / 0.689
1nhp FADNADH peroxidase 1.11.1.1 0.687
2x8g FADThioredoxin glutathione reductase / 0.687
4usr FADMonooxygenase / 0.687
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.686
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.686
3ada NADSubunit alpha of sarocosine oxidase / 0.686
4yry FADGlutamate synthase, beta subunit / 0.686
2r0c FADPutative FAD-monooxygenase / 0.685
4eqr FADCoenzyme A disulfide reductase / 0.685
3ad9 NADSubunit alpha of sarocosine oxidase / 0.683
3ka7 FADPutative oxidoreductase / 0.683
4h4z FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.683
1fec FADTrypanothione reductase 1.8.1.12 0.682
1rsg FADPolyamine oxidase FMS1 / 0.682
4opi FDAConserved Archaeal protein / 0.682
2xvh FADPutative flavin-containing monooxygenase / 0.681
5fs9 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.681
1wam FADUDP-galactopyranose mutase 5.4.99.9 0.680
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.680
2xvi FADPutative flavin-containing monooxygenase / 0.680
4ntc FADThioredoxin reductase gliT / 0.680
1yqz FADCoenzyme A disulfide reductase / 0.679
2gr0 FADFerredoxin reductase / 0.679
2jk6 FADTrypanothione reductase / 0.679
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.678
2gr3 FADFerredoxin reductase / 0.678
3lxd FADFAD-dependent pyridine nucleotide-disulfide oxidoreductase / 0.678
3syi FADSulfide-quinone reductase / 0.678
4ech FADPolyamine oxidase FMS1 / 0.678
4emw FADCoenzyme A disulfide reductase / 0.678
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.678
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.678
4opg FDAConserved Archaeal protein / 0.678
4tm4 FDAKtzI / 0.678
1o94 ADPTrimethylamine dehydrogenase 1.5.8.2 0.677
3cty FADProbable thioredoxin reductase / 0.677
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.677
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.677
4j31 FADKynurenine 3-monooxygenase / 0.677
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.676
2jb2 FADL-amino acid oxidase / 0.676
4mo2 FDAUDP-galactopyranose mutase / 0.676
1djn ADPTrimethylamine dehydrogenase 1.5.8.2 0.675
2igo FADPyranose 2-oxidase / 0.675
2xyo FADTetX family tetracycline inactivation enzyme / 0.675
2ylw FADPhenylacetone monooxygenase 1.14.13.92 0.675
3atr FDAConserved Archaeal protein / 0.675
2yg6 FADPutrescine oxidase / 0.674
3gwd FADCyclohexanone monooxygenase / 0.674
1tyt FADTrypanothione reductase 1.8.1.12 0.673
2iw5 FADLysine-specific histone demethylase 1A 1 0.673
4gr1 FADGlutathione reductase, mitochondrial 1.8.1.7 0.673
4h2p FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.673
4txi FAD[F-actin]-methionine sulfoxide oxidase MICAL1 1.14.13 0.673
1m6i FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.672
3lsi FADPyranose 2-oxidase / 0.672
4tm3 FADKtzI / 0.672
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.672
2zzc FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.671
3v76 FDAUncharacterized protein / 0.671
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.670
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.670
2bi8 FADUDP-galactopyranose mutase 5.4.99.9 0.670
3ept FDAPutative FAD-monooxygenase / 0.670
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.669
2xlp FADPutative flavin-containing monooxygenase / 0.669
3dk8 FADGlutathione reductase, mitochondrial 1.8.1.7 0.669
3jyo NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.669
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.668
1trb FADThioredoxin reductase 1.8.1.9 0.668
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.668
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.668
4opt FDAConserved Archaeal protein / 0.668
5fs8 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.668
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.667
1tde FADThioredoxin reductase 1.8.1.9 0.667
3t2y FADSulfide-quinone reductase / 0.667
4nec SAHPutative SAM-dependent methyltransferase / 0.667
1gxf FADTrypanothione reductase 1.8.1.12 0.666
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.666
4opl FDAConserved Archaeal protein / 0.666
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.665
2nvk FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.665
3bg7 FADPyranose 2-oxidase / 0.665
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.665
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.665
3jyp NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.665
3pl8 FADPyranose 2-oxidase / 0.665
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.664
2gqw FADFerredoxin reductase / 0.664
2rgh FADAlpha-Glycerophosphate Oxidase / 0.664
3dk4 FADGlutathione reductase, mitochondrial 1.8.1.7 0.664
4la1 FADThioredoxin glutathione reductase / 0.663
2yg7 FADPutrescine oxidase / 0.662
2yls FADPhenylacetone monooxygenase 1.14.13.92 0.662
4bk3 FADProbable salicylate monooxygenase / 0.662
4opd FDAConserved Archaeal protein / 0.662
2b9x FADPutative aminooxidase / 0.661
2tpr FADTrypanothione reductase 1.8.1.12 0.661
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.661
3nlc FADUncharacterized protein / 0.661
3sqp FADGlutathione reductase, mitochondrial 1.8.1.7 0.661
4emi NADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component 1.18.1.3 0.661
4k28 NADShikimate dehydrogenase family protein / 0.661
4opc FDAConserved Archaeal protein / 0.661
5l3d FADLysine-specific histone demethylase 1A 1 0.661
1nhq FADNADH peroxidase 1.11.1.1 0.660
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.660
3gwf FADCyclohexanone monooxygenase / 0.660
4b66 FADL-ornithine N(5)-monooxygenase / 0.660
4g9k FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial 1.6.5.9 0.660
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.659
4yai NAIC alpha-dehydrogenase / 0.659
1grb FADGlutathione reductase, mitochondrial 1.8.1.7 0.658
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.658
3d64 NADAdenosylhomocysteinase / 0.658
4j57 FADThioredoxin reductase 2 1.8.1.9 0.658
2cul FADGidA-related protein / 0.657
2gr1 FADFerredoxin reductase / 0.657
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.657
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.657
2b9w FADPutative aminooxidase / 0.656
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.655
2eq7 FADDihydrolipoyl dehydrogenase / 0.655
2o06 MTASpermidine synthase 2.5.1.16 0.655
2wba FADTrypanothione reductase 1.8.1.12 0.655
2x8h FADThioredoxin glutathione reductase / 0.655
3int FDAUDP-galactopyranose mutase 5.4.99.9 0.655
3k4c FADPyranose 2-oxidase / 0.655
4bv6 FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.655
4d04 FADPhenylacetone monooxygenase 1.14.13.92 0.655
1f3p FADFerredoxin reductase / 0.654
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.654
1gsn FADGlutathione reductase, mitochondrial 1.8.1.7 0.654
2xls FADPutative flavin-containing monooxygenase / 0.654
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.654
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.654
4jy2 FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.654
4pyo SAHCatechol O-methyltransferase 2.1.1.6 0.654
1bzl FADTrypanothione reductase 1.8.1.12 0.653
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.653
3s55 NADPutative short-chain dehydrogenase/reductase / 0.653
3axb FADPutative oxidoreductase / 0.652
4cnj FADL-amino acid oxidase / 0.652
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.651
3lad FADDihydrolipoyl dehydrogenase / 0.650
4lii FADApoptosis-inducing factor 1, mitochondrial 1.1.1 0.650
4pyn SAHCatechol O-methyltransferase 2.1.1.6 0.650