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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1p0n FMN Isopentenyl-diphosphate delta-isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1p0n FMNIsopentenyl-diphosphate delta-isomerase / 0.964
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
4hnb FMNLOV protein / 0.701
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.698
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.691
4kuk RBFPutative blue-light photoreceptor / 0.682
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.681
2z6d FMNPhototropin-2 2.7.11.1 0.673
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.666
1z44 FMNNADPH dehydrogenase / 0.663
2pg0 FADAcyl-CoA dehydrogenase / 0.662
4ttc FMNIodotyrosine deiodinase 1 / 0.662
3hjk FADVivid PAS protein VVD / 0.660
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.658
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.657
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.654