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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ozv SAH Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ozv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.948
1mlv SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.936
1p0y SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.889
2h21 SAMRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.875
2h23 SAHRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.857
2h2j SFGRibulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.857
3m53 SAHHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.773
3kmt SAHHistone H3K27 methylase / 0.771
4j83 SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.771
1n6c SAMHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.762
3fpd SAHHistone-lysine N-methyltransferase EHMT1 / 0.762
3hna SAHHistone-lysine N-methyltransferase EHMT1 / 0.762
3swc SAHHistone-lysine N-methyltransferase EHMT1 / 0.762
2rfi SAHHistone-lysine N-methyltransferase EHMT1 / 0.760
3oxf SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.757
3qwp SAMHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.757
5hq8 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.757
4o6f SAHN-lysine methyltransferase SMYD2 / 0.751
4h12 SAHHistone-lysine N-methyltransferase SETD2 2.1.1.43 0.750
2o8j SAHHistone-lysine N-methyltransferase EHMT2 / 0.749
2igq SAHHistone-lysine N-methyltransferase EHMT1 / 0.748
3cbp SFGHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.747
2bqz SAHN-lysine methyltransferase KMT5A / 0.743
2r3a SAMHistone-lysine N-methyltransferase SUV39H2 2.1.1.43 0.743
3ru0 SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.742
5jj0 SAMHistone-lysine N-methyltransferase EHMT2 / 0.740
3pdn SFGHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.739
5jhn SAMHistone-lysine N-methyltransferase EHMT2 / 0.736
3n71 SFGHistone-lysine N-methyltransferase Smyd1 / 0.734
5ex0 SAHHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.731
3mo0 SAHHistone-lysine N-methyltransferase EHMT1 / 0.726
3tg4 SAMN-lysine methyltransferase SMYD2 / 0.726
5jin SAMHistone-lysine N-methyltransferase EHMT2 / 0.721
4z4p SAHHistone-lysine N-methyltransferase 2D 2.1.1.43 0.715
5f59 SAHHistone-lysine N-methyltransferase 2C 2.1.1.43 0.703
3vuz K15Histone-lysine N-methyltransferase SETD7 2.1.1.43 0.691
2h2e SA8Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 2.1.1.127 0.687
3s8p SAMHistone-lysine N-methyltransferase KMT5B 2.1.1.43 0.684
4au7 SAHHistone-lysine N-methyltransferase KMT5C 2.1.1.43 0.674
3rib SAHN-lysine methyltransferase SMYD2 / 0.665
4bup SAMHistone-lysine N-methyltransferase KMT5B 2.1.1.43 0.665
4o30 SAHProbable Histone-lysine N-methyltransferase ATXR5 2.1.1.43 0.655
4ypa SAMHistone-lysine N-methyltransferase ASH1L 2.1.1.43 0.653