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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1owl FAD Deoxyribodipyrimidine photo-lyase 4.1.99.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.257
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.211
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.201
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.197
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.196
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.183
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.147
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.096
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.019
1u3d FADCryptochrome-1 / 1.015
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.014
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.998
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.988
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.984
3cvu FADRE11660p / 0.977
1u3c FADCryptochrome-1 / 0.963
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.954
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.949
2wq6 FADRE11660p / 0.938
3cvy FADRE11660p / 0.929
4i6g FADCryptochrome-2 / 0.909
2wq7 FADRE11660p / 0.904
4dja FAD(6-4) photolyase / 0.889
4cdm FADDeoxyribodipyrimidine photolyase / 0.884
2wb2 FADRE11660p / 0.864
4jzy FADCryptochrome-1 / 0.848
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.831
1np7 FADCryptochrome DASH / 0.815
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.778
4gu5 FADCryptochrome-1 / 0.699
1nb9 RBFRiboflavin kinase 2.7.1.26 0.682
1s4m LUMRiboflavin biosynthesis protein / 0.675
3pl8 FADPyranose 2-oxidase / 0.673
1t6z RBFRiboflavin biosynthesis protein / 0.671
3gfz FMNUncharacterized protein / 0.666
1b4v FADCholesterol oxidase 1.1.3.6 0.662
1p4m FMNRiboflavin kinase 2.7.1.26 0.661
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.659
3gg0 FMNUncharacterized protein / 0.658
3gg1 FMNUncharacterized protein / 0.658
3vqr FADPutative oxidoreductase / 0.657
2igo FADPyranose 2-oxidase / 0.656
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.656
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.655
3ept FDAPutative FAD-monooxygenase / 0.653
4yus FMNFamily 3 adenylate cyclase / 0.652
5j4e FMNSensory box protein / 0.652
1cc2 FADCholesterol oxidase 1.1.3.6 0.651
1n07 FMNRiboflavin kinase 2.7.1.26 0.650