Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1oqm UD2 Beta-1,4-galactosyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1oqm UD2Beta-1,4-galactosyltransferase 1 / 1.427
1yro GDUBeta-1,4-galactosyltransferase 1 / 1.216
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 1.182
1o23 UPGBeta-1,4-galactosyltransferase 1 / 0.999
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.961
5c1g GDUHisto-blood group ABO system transferase / 0.744
5c3a URMHisto-blood group ABO system transferase / 0.732
3v0p 4GWHisto-blood group ABO system transferase / 0.725
3zgf IUGHisto-blood group ABO system transferase / 0.724
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.718
5c8r UPGHisto-blood group ABO system transferase / 0.717
5c4c UPGHisto-blood group ABO system transferase / 0.707
5c4f UPGHisto-blood group ABO system transferase / 0.706
5c4b UPGHisto-blood group ABO system transferase / 0.695
5c48 URMHisto-blood group ABO system transferase / 0.684
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.673
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.673
1zdg UPGGlycogenin-1 2.4.1.186 0.667
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.666
4f9a ADPCell division cycle 7-related protein kinase 2.7.11.1 0.659
1zdf UPGGlycogenin-1 2.4.1.186 0.657
2p0a ANPSynapsin-3 / 0.656
2wvm GDDMannosyl-3-phosphogylcerate synthase / 0.655
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.652