sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1opm | IYG | Peptidyl-glycine alpha-amidating monooxygenase | 1.14.17.3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1opm | IYG | Peptidyl-glycine alpha-amidating monooxygenase | 1.14.17.3 | 1.059 | |
| 1sdw | IYT | Peptidyl-glycine alpha-amidating monooxygenase | 1.14.17.3 | 0.990 | |
| 4isu | IKM | Glutamate receptor 2 | / | 0.669 | |
| 1ikg | REX | D-alanyl-D-alanine carboxypeptidase | 3.4.16.4 | 0.666 | |
| 4f3g | KAI | Glutamate receptor 3 | / | 0.662 | |
| 3dds | 26B | Glycogen phosphorylase, liver form | 2.4.1.1 | 0.657 | |
| 3ogk | OGK | Coronatine-insensitive protein 1 | / | 0.653 | |
| 4bdo | KAI | Glutamate receptor ionotropic, kainate 2 | / | 0.652 | |
| 2cvx | DGT | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.651 | |
| 3tza | TZG | Glutamate receptor 2 | / | 0.651 | |
| 4c04 | SFG | Protein arginine N-methyltransferase 6 | / | 0.650 |