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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ooq FMN Oxygen-insensitive NAD(P)H nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 1.256
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 1.170
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.160
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 1.160
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.159
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 1.150
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 1.145
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 1.137
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 1.125
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.086
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 1.050
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 1.039
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.035
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.019
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.986
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.981
3ge6 FMNNitroreductase / 0.946
2wzv FMNNitroreductase NfnB / 0.936
2wzw FMNNitroreductase NfnB / 0.914
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.908
3of4 FMNNitroreductase / 0.891
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.885
4qly FMNEnone reductase CLA-ER / 0.876
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.849
3pxv FMNNitroreductase / 0.849
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.848
3koq FMNPutative nitroreductase / 0.824
3e39 FMNNitroreductase / 0.809
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.808
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.791
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.785
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.779
2fre FMNNAD(P)H-flavin oxidoreductase / 0.772
3eo8 FMNPutative nitroreductase / 0.754
2ifa FMNUncharacterized protein / 0.717
4ttb FMNIodotyrosine deiodinase 1 / 0.710
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.707
2bkj FMNNADPH-flavin oxidoreductase / 0.702
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.701
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.699
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.692
3hj9 FMNUncharacterized protein / 0.685
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.684
3g6x DGTDNA polymerase iota 2.7.7.7 0.671
5cho FADFlavin reductase / 0.665
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.663
1a8p FADFerredoxin--NADP reductase / 0.662
3e4v FMNUncharacterized protein / 0.660
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.656
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.656
4h4u FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655