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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1omo NAD Alanine dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1omo NADAlanine dehydrogenase / 0.982
4j43 NADUncharacterized protein / 0.692
4jk3 NADUncharacterized protein / 0.682
1u7h NADPutative ornithine cyclodeaminase / 0.674
1pzh NADLactate dehydrogenase / 0.666
1a71 NADAlcohol dehydrogenase E chain 1.1.1.1 0.665
1pzf A3DLactate dehydrogenase / 0.654
1x7d NADPutative ornithine cyclodeaminase / 0.654
4j49 NADUncharacterized protein / 0.654
1llu NADAlcohol dehydrogenase / 0.652
4nd2 A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.650