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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1olt SAM Oxygen-independent coproporphyrinogen III oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1olt SAMOxygen-independent coproporphyrinogen III oxidase / 0.874
3m4p 4ADAsparaginyl-tRNA synthetase, putative / 0.659
4o30 SAHProbable Histone-lysine N-methyltransferase ATXR5 2.1.1.43 0.659
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
3qwp SAMHistone-lysine N-methyltransferase SMYD3 2.1.1.43 0.658
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.651