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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1oi9 N20 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.919
2iw9 4SPCyclin-dependent kinase 2 2.7.11.22 0.818
1h1s 4SPCyclin-dependent kinase 2 2.7.11.22 0.789
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.784
4eor 4SPCyclin-dependent kinase 2 2.7.11.22 0.784
1oiu N76Cyclin-dependent kinase 2 2.7.11.22 0.765
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1h1r 6CPCyclin-dependent kinase 2 2.7.11.22 0.734
1h1q 2A6Cyclin-dependent kinase 2 2.7.11.22 0.723
1oiy N41Cyclin-dependent kinase 2 2.7.11.22 0.720
1ogu ST8Cyclin-dependent kinase 2 2.7.11.22 0.711
4bcn T9NCyclin-dependent kinase 2 2.7.11.22 0.686
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.684
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.684
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.676
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.667
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.665
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.661
4e5f 0N7Polymerase acidic protein / 0.660
3elj GS7Mitogen-activated protein kinase 8 2.7.11.24 0.659
3mfu ANPPeripheral plasma membrane protein CASK 2.7.11.1 0.658
4brx KGWFocal adhesion kinase 1 2.7.10.2 0.658
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.656
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.655
2acx ANPG protein-coupled receptor kinase 6 2.7.11.16 0.652
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.650