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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ogu ST8 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ogu ST8Cyclin-dependent kinase 2 2.7.11.22 0.895
1h1q 2A6Cyclin-dependent kinase 2 2.7.11.22 0.764
1h1s 4SPCyclin-dependent kinase 2 2.7.11.22 0.732
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.727
1oiu N76Cyclin-dependent kinase 2 2.7.11.22 0.721
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.712
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.711
1h1r 6CPCyclin-dependent kinase 2 2.7.11.22 0.707
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.693
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.689
2iw9 4SPCyclin-dependent kinase 2 2.7.11.22 0.687
4eor 4SPCyclin-dependent kinase 2 2.7.11.22 0.673
1oiy N41Cyclin-dependent kinase 2 2.7.11.22 0.665
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.659
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.658
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.658