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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ofd FMN Ferredoxin-dependent glutamate synthase 2 1.4.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 1.149
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 1.029
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.943
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.937
2z6i FMN2-nitropropane dioxygenase / 0.857
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.829
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.826
5cpm FNRNADH:flavin oxidoreductase / 0.815
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.812
3n19 FNRXenobiotic reductase / 0.811
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.807
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.807
3l67 FMNXenobiotic reductase / 0.806
3l5l FMNXenobiotic reductase / 0.805
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.804
4uth FMNXenobiotic reductase / 0.801
4utm FNRXenobiotic reductase / 0.801
4utk FNRXenobiotic reductase / 0.799
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.795
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.794
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.793
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.789
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.789
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.789
4utl FNRXenobiotic reductase / 0.788
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.787
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.787
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.779
1z41 FMNNADPH dehydrogenase / 0.778
1z48 FMNNADPH dehydrogenase / 0.774
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.773
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.769
1vhn FMNtRNA-dihydrouridine synthase / 0.766
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.764
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.762
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.761
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.761
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.759
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.757
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.757
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.757
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.754
2h8x FMNXenA / 0.753
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.751
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.751
4e2d FMNDehydrogenase / 0.751
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.751
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.750
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.749
3hf3 FMNChromate reductase / 0.749
4cw5 FMNDfnA / 0.748
3n14 FMNXenobiotic reductase / 0.746
1gwj FMNMorphinone reductase / 0.745
2j6x FMNLactate oxidase / 0.744
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.744
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.740
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.739
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.738
4jic FMNGTN Reductase / 0.738
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.735
3atz FMNProstaglandin F2a synthase / 0.735
1z44 FMNNADPH dehydrogenase / 0.734
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.734
2gjl FMNNitronate monooxygenase 1.13.12.16 0.734
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.732
4m5p FMNNADPH dehydrogenase / 0.731
2gjn FMNNitronate monooxygenase 1.13.12.16 0.730
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.730
4yco FMNtRNA-dihydrouridine(16) synthase / 0.730
4tmb FMNOld yellow enzyme / 0.729
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.723
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.723
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.720
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.720
1h51 FMNPentaerythritol tetranitrate reductase / 0.717
4e2b FMNDehydrogenase / 0.716
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.714
3oix FMNDihydroorotate dehydrogenase / 0.714
3p84 FMNPentaerythritol tetranitrate reductase / 0.714
3tjl FMNNADPH dehydrogenase / 0.714
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.713
2abb FMNPentaerythritol tetranitrate reductase / 0.712
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.709
1h50 FMNPentaerythritol tetranitrate reductase / 0.709
2c12 FADNitroalkane oxidase 1.7.3.1 0.708
4q4k FMNUncharacterized protein / 0.704
4df2 FMNNADPH dehydrogenase / 0.703
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.703
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.699
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.698
3p67 FMNPentaerythritol tetranitrate reductase / 0.698
3p8i FMNPentaerythritol tetranitrate reductase / 0.697
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.694
3p62 FMNPentaerythritol tetranitrate reductase / 0.694
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.693
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.693
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.692
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.692
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.689
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.689
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.689
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.689
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.688
3gka FMNN-ethylmaleimide reductase / 0.688
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.686
3f03 FMNPentaerythritol tetranitrate reductase / 0.683
3p8j FMNPentaerythritol tetranitrate reductase / 0.682
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.681
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.677
3p82 FMNPentaerythritol tetranitrate reductase / 0.675
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.674
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.672
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.667
4qai FMNNADPH dehydrogenase / 0.666
1vdc FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.665
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.663
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.663
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.663
2rh9 IGPTryptophan synthase alpha chain / 0.659
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.659
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.657
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.657
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.653
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.651
4wct FADFructosyl amine:oxygen oxidoreductase / 0.651
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.651
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.651
2gr3 FADFerredoxin reductase / 0.650