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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1obn ASV Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1obn ASVIsopenicillin N synthase 1.21.3.1 1.051
1bk0 ACVIsopenicillin N synthase 1.21.3.1 1.025
1hb1 OCVIsopenicillin N synthase 1.21.3.1 1.023
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.998
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.987
1blz ACVIsopenicillin N synthase 1.21.3.1 0.966
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.955
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.952
1w06 W05Isopenicillin N synthase 1.21.3.1 0.924
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.909
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.897
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.870
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.855
2vbd V10Isopenicillin N synthase 1.21.3.1 0.840
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.831
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.824
1odn APVIsopenicillin N synthase 1.21.3.1 0.820
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.817
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.810
2vcm M11Isopenicillin N synthase 1.21.3.1 0.777
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.776
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.770
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.699
4xg1 LLPDiaminopimelate decarboxylase / 0.684
2fzi DH3Dihydrofolate reductase 1.5.1.3 0.666
5cc9 DDFDihydrofolate reductase 1.5.1.3 0.657
4bqs K2QShikimate kinase 2.7.1.71 0.656
3ojx NAPNADPH--cytochrome P450 reductase / 0.655
5bp9 SAHPutative methyltransferase protein / 0.655
3och 2MXDihydrofolate reductase 1.5.1.3 0.654
3zku HCVIsopenicillin N synthase 1.21.3.1 0.654
3rt8 CWDGlutamate receptor 3 / 0.652
1ra3 MTXDihydrofolate reductase 1.5.1.3 0.650
4yal 2AMNADPH--cytochrome P450 reductase / 0.650