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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1obb NAD Alpha-glucosidase 3.2.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1obb NADAlpha-glucosidase 3.2.1.20 1.093
1up7 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.798
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.758
4okn NAIL-lactate dehydrogenase A chain 1.1.1.27 0.753
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.722
1hyh NADL-2-hydroxyisocaproate dehydrogenase / 0.704
4nd2 A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.685
4l4s NAIL-lactate dehydrogenase A chain 1.1.1.27 0.681
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.681
1axg NADAlcohol dehydrogenase E chain 1.1.1.1 0.678
1ie3 NADMalate dehydrogenase / 0.675
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.674
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.672
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.670
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.669
4oaq NDPR-specific carbonyl reductase / 0.669
2jhf NADAlcohol dehydrogenase E chain 1.1.1.1 0.666
1kol NADGlutathione-independent formaldehyde dehydrogenase / 0.663
1adb CNDAlcohol dehydrogenase E chain 1.1.1.1 0.660
1het NADAlcohol dehydrogenase E chain 1.1.1.1 0.658
1up6 NAD6-phospho-beta-glucosidase BglT 3.2.1.86 0.655