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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1oaa NAP Sepiapterin reductase 1.1.1.153

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1oaa NAPSepiapterin reductase 1.1.1.153 1.460
4hwk NAPSepiapterin reductase 1.1.1.153 1.299
4j7x NAPSepiapterin reductase 1.1.1.153 1.279
4j7u NAPSepiapterin reductase 1.1.1.153 1.224
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 1.040
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 1.009
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.991
4bmv NAPShort-chain dehydrogenase / 0.971
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.954
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.922
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.910
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.908
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.905
3d3w NAPL-xylulose reductase 1.1.1.10 0.904
4kwh NAPReductase homolog / 0.899
1pr9 NAPL-xylulose reductase 1.1.1.10 0.893
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.893
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.892
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.892
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.881
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.881
3tn7 NJPShort-chain alcohol dehydrogenase / 0.875
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.868
3l77 NJPShort-chain alcohol dehydrogenase / 0.862
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.856
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.854
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.854
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.854
3o26 NDPSalutaridine reductase / 0.848
1ipe NDPTropinone reductase 2 1.1.1.236 0.845
3p19 NDPPutative blue fluorescent protein / 0.838
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.830
2jah NDPClavaldehyde dehydrogenase / 0.829
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.827
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.827
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.827
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.826
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.826
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.824
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.823
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.822
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.818
4b79 NADProbable short-chain dehydrogenase / 0.818
1ae1 NAPTropinone reductase 1 / 0.816
3geg NADShort-chain dehydrogenase/reductase SDR / 0.816
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.814
2dte NAIGlucose 1-dehydrogenase related protein / 0.812
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.812
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.811
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.810
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.808
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.808
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.807
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.807
3tsc NADUncharacterized protein / 0.805
4yag NAIC alpha-dehydrogenase / 0.805
3r3s NADPutative oxidoreductase / 0.804
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.803
3sx2 NADUncharacterized protein / 0.803
5jyd NADShort chain dehydrogenase / 0.803
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.802
2bd0 NAPSepiapterin reductase / 0.800
4dbz NDPPutative ketoacyl reductase 1.3.1 0.800
1x7h NDPPutative ketoacyl reductase 1.3.1 0.799
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.799
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.797
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.797
1sny NAPLD36273p / 0.793
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.791
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.789
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.789
3ai2 NDPNADPH-sorbose reductase / 0.788
3ai3 NDPNADPH-sorbose reductase / 0.787
4fn4 NADShort chain dehydrogenase / 0.787
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.784
3uce NDPDehydrogenase / 0.784
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.779
4u7w NDPMxaA / 0.779
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.778
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.778
3wds NADNADH-dependent quinuclidinone reductase / 0.776
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.775
5lc1 NADL-threonine 3-dehydrogenase / 0.774
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.773
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.773
2yut NAPPutative short-chain oxidoreductase / 0.772
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.772
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.771
3qrw NDPPutative ketoacyl reductase 1.3.1 0.770
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.769
3s55 NADPutative short-chain dehydrogenase/reductase / 0.769
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.769
2c29 NAPDihydroflavonol 4-reductase / 0.768
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.764
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.764
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.763
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.762
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.762
4clo NAPPteridine reductase / 0.761
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.761
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.758
1xkq NDPUncharacterized protein / 0.758
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.757
4yai NAIC alpha-dehydrogenase / 0.757
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.756
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.755
3icp NADNAD-dependent epimerase/dehydratase / 0.754
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.753
2p5y NADUDP-glucose 4-epimerase / 0.752
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.751
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.751
3ak4 NADNADH-dependent quinuclidinone reductase / 0.751
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.751
1x7g NAPPutative ketoacyl reductase 1.3.1 0.750
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.749
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.749
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.749
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.748
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.747
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.745
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.745
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.744
5jla NADPutative short-chain dehydrogenase/reductase / 0.744
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.742
3ko8 NADNAD-dependent epimerase/dehydratase / 0.739
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.739
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.738
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.737
3sju NDPKeto reductase / 0.737
3u4c NDPNADPH-dependent reductase BacG / 0.737
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.736
2bfo NDPPteridine reductase 1 1.5.1.33 0.735
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.734
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.734
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.733
1zem NADXylitol dehydrogenase / 0.732
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.732
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.731
1w4z NAPPutative ketoacyl reductase 1.3.1 0.730
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.727
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.727
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.726
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.725
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.723
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.723
3h4v NAPPteridine reductase 1 1.5.1.33 0.723
3bmo NAPPteridine reductase / 0.721
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.720
2yy7 NADL-threonine dehydrogenase / 0.719
3f1k NAPUncharacterized oxidoreductase YciK 1 0.718
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.718
4wec NADShort chain dehydrogenase / 0.714
3tox NAPPutative oxidoreductase / 0.713
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.712
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.711
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.710
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.709
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.707
1wnt NAPL-xylulose reductase 1.1.1.10 0.706
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.706
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.706
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.706
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.705
3wmx NADNAD dependent epimerase/dehydratase / 0.705
4qec NAPElxO / 0.705
3aw9 NADNAD-dependent epimerase/dehydratase / 0.703
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.703
1sby NADAlcohol dehydrogenase 1.1.1.1 0.701
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.701
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.700
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.699
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.698
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.697
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.697
4l4x NDPAmphI / 0.697
4ejm NAPPutative zinc-binding dehydrogenase / 0.696
4hxy NDPPlm1 / 0.694
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.693
1rpn NDPGDP-mannose 4,6-dehydratase / 0.692
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.690
4b4o NDPEpimerase family protein SDR39U1 / 0.690
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
5d2e NAPMlnE / 0.690
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.689
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.688
2z1m NDPGDP-mannose 4,6-dehydratase / 0.687
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.687
2wdz NADGalactitol dehydrogenase / 0.686
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.686
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.686
4idg NADPutative UDP-glucose 4-epimerase / 0.686
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
1orr NADCDP-paratose 2-epimerase / 0.684
4xyb NDPFormate dehydrogenase / 0.684
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.683
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.682
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.682
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.681
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.681
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.681
1u31 NDPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.680
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.680
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.679
3a4v NADNDP-sugar epimerase / 0.679
4eso NAPPutative oxidoreductase / 0.679
2p5u NADUDP-glucose 4-epimerase / 0.678
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.677
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.677
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.675
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.674
3zhb NAPPutative dehydrogenase / 0.674
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.673
2yjz NAPMetalloreductase STEAP4 1.16.1 0.673
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.672
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.672
2wsb NADGalactitol dehydrogenase / 0.669
3rkr NAPUncharacterized protein / 0.669
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.669
3lqf NADGalactitol dehydrogenase / 0.667
3orf NADDihydropteridine reductase 1.5.1.34 0.667
4o1m NADEnoyl-acyl carrier reductase / 0.667
4qed NAPElxO / 0.666
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.665
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
3iup NDPPossible NADH oxidoreductase / 0.665
4egb NADdTDP-glucose 4,6-dehydratase / 0.665
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.665
3h2s NDPPutative NADH-flavin reductase / 0.664
1ek5 NADUDP-glucose 4-epimerase / 0.663
2q46 NAPUncharacterized protein At5g02240 / 0.663
1g1a NADdTDP-glucose 4,6-dehydratase / 0.662
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.661
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.661
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.660
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.659
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.659
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.659
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.659
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.658
3ras NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.658
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.657
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.656
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.655
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.653
4oqy NDP(S)-imine reductase / 0.653
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.651
4yaw 2AMNADPH--cytochrome P450 reductase / 0.651
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.650
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.650
5a04 NDPGlucose-fructose oxidoreductase / 0.650