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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1o2g 696 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1o2g 696Prothrombin 3.4.21.5 0.951
1gj5 130Prothrombin 3.4.21.5 0.941
1gj4 132Prothrombin 3.4.21.5 0.767
1o5g CR9Prothrombin 3.4.21.5 0.762
1ghv 120Prothrombin 3.4.21.5 0.736
1c1u BAIProthrombin 3.4.21.5 0.730
1c5n ESIProthrombin 3.4.21.5 0.716
1c1w BAHProthrombin 3.4.21.5 0.697
1oyt FSNProthrombin 3.4.21.5 0.688
4az2 9MUProthrombin 3.4.21.5 0.667
2zgx 29UProthrombin 3.4.21.5 0.666
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
4hi0 GDPUrease accessory protein UreG / 0.659
2gr0 ADPFerredoxin reductase / 0.655
2zfr 46UProthrombin 3.4.21.5 0.654