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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1o23 UPG Beta-1,4-galactosyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1o23 UPGBeta-1,4-galactosyltransferase 1 / 1.252
1yro GDUBeta-1,4-galactosyltransferase 1 / 1.073
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.999
2fyc GDUBeta-1,4-galactosyltransferase 1 2.4.1 0.976
4ee3 UDHBeta-1,4-galactosyltransferase 1 / 0.873
5c4c UPGHisto-blood group ABO system transferase / 0.680
2bo8 GDXMannosylglycerate synthase / 0.662
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.651