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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nzq 162 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nzq 162Prothrombin 3.4.21.5 1.011
4baq M4ZProthrombin 3.4.21.5 0.818
4bak M67Prothrombin 3.4.21.5 0.802
1k21 IGNProthrombin 3.4.21.5 0.798
4bao MVFProthrombin 3.4.21.5 0.794
4ban M6SProthrombin 3.4.21.5 0.788
1k22 MELProthrombin 3.4.21.5 0.786
4bah MELProthrombin 3.4.21.5 0.785
4bam MM9Prothrombin 3.4.21.5 0.782
2anm CDOProthrombin 3.4.21.5 0.777
1riw OSCProthrombin 3.4.21.5 0.776
2a2x NA9Prothrombin 3.4.21.5 0.769
1ypk CCRProthrombin 3.4.21.5 0.758
4ax9 N5NProthrombin 3.4.21.5 0.758
1ypm RA4Prothrombin 3.4.21.5 0.744
3utu 1TSProthrombin 3.4.21.5 0.741
4ayv 9MQProthrombin 3.4.21.5 0.736
3dux 64UProthrombin 3.4.21.5 0.735
1c4u IH1Prothrombin 3.4.21.5 0.734
2znk 31UProthrombin 3.4.21.5 0.734
4e7r 0NWProthrombin 3.4.21.5 0.729
2zhf 49UProthrombin 3.4.21.5 0.722
1ype UIPProthrombin 3.4.21.5 0.721
2zfq 45UProthrombin 3.4.21.5 0.720
2cn0 F25Prothrombin 3.4.21.5 0.716
4ayy 9MXProthrombin 3.4.21.5 0.716
1nt1 T76Prothrombin 3.4.21.5 0.715
2zhq 27UProthrombin 3.4.21.5 0.714
2ziq 26UProthrombin 3.4.21.5 0.714
1ta2 176Prothrombin 3.4.21.5 0.712
1ypj UIBProthrombin 3.4.21.5 0.711
1kts C24Prothrombin 3.4.21.5 0.710
3plp BBACationic trypsin 3.4.21.4 0.709
3v0x ANHCationic trypsin 3.4.21.4 0.708
1o0d 163Prothrombin 3.4.21.5 0.707
1uvs I11Prothrombin 3.4.21.5 0.706
2zi2 24UProthrombin 3.4.21.5 0.704
4az2 9MUProthrombin 3.4.21.5 0.703
1ypl RA8Prothrombin 3.4.21.5 0.702
2gde SN3Prothrombin 3.4.21.5 0.699
1ta6 177Prothrombin 3.4.21.5 0.695
1oyt FSNProthrombin 3.4.21.5 0.694
2bok 784Coagulation factor X 3.4.21.6 0.694
2zgb 21UProthrombin 3.4.21.5 0.692
2cf8 ESHProthrombin 3.4.21.5 0.684
1d4p BPPProthrombin 3.4.21.5 0.682
3dhk 23UProthrombin 3.4.21.5 0.680
1vzq SHYProthrombin 3.4.21.5 0.679
2zhe 13UProthrombin 3.4.21.5 0.676
2zff 53UProthrombin 3.4.21.5 0.669
1wtg 3BPCoagulation factor VII 3.4.21.21 0.666
3p17 99PProthrombin 3.4.21.5 0.666
1lpk CBBCoagulation factor X 3.4.21.6 0.664
1c1u BAIProthrombin 3.4.21.5 0.663
3qto 10PProthrombin 3.4.21.5 0.663
5cmx 0G6Prothrombin 3.4.21.5 0.663
1ypg UIRProthrombin 3.4.21.5 0.661
1xm1 GAHProthrombin 3.4.21.5 0.660
2zf0 51UProthrombin 3.4.21.5 0.659
2zp0 PI0Coagulation factor VII 3.4.21.21 0.658
1t4v 14AProthrombin 3.4.21.5 0.656
2zhw 12UProthrombin 3.4.21.5 0.655
3biv 11UProthrombin 3.4.21.5 0.654
3qwc 98PProthrombin 3.4.21.5 0.652
1sb1 165Prothrombin 3.4.21.5 0.651
3biu 10UProthrombin 3.4.21.5 0.651
1wv7 5PICoagulation factor VII 3.4.21.21 0.650
3qtv 06PProthrombin 3.4.21.5 0.650