Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nyx DRF Peroxisome proliferator-activated receptor gamma

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nyx DRFPeroxisome proliferator-activated receptor gamma / 1.213
1i7i AZ2Peroxisome proliferator-activated receptor gamma / 0.708
1knu YPAPeroxisome proliferator-activated receptor gamma / 0.697
1i7g AZ2Peroxisome proliferator-activated receptor alpha / 0.692
3dok GWJPol protein / 0.670
2gtk 208Peroxisome proliferator-activated receptor gamma / 0.668