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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nvt NAP Shikimate dehydrogenase (NADP(+))

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nvt NAPShikimate dehydrogenase (NADP(+)) / 1.067
2ev9 NAPShikimate dehydrogenase (NADP(+)) / 0.700
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.687
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.677
2cy0 NAPShikimate dehydrogenase (NADP(+)) / 0.671
1npd NADQuinate/shikimate dehydrogenase / 0.661
1vi2 NADQuinate/shikimate dehydrogenase / 0.653
2vna NAPProstaglandin reductase 2 1.3.1.48 0.651