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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nvf ADP Pentafunctional AROM polypeptide

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nvf ADPPentafunctional AROM polypeptide / 0.927
1sg6 NADPentafunctional AROM polypeptide / 0.763
1nve NADPentafunctional AROM polypeptide / 0.759
1nrx NADPentafunctional AROM polypeptide / 0.737
1nva ADPPentafunctional AROM polypeptide / 0.696
1rrm APRLactaldehyde reductase 1.1.1.77 0.687
3okf NAD3-dehydroquinate synthase 4.2.3.4 0.685
5br4 NADLactaldehyde reductase 1.1.1.77 0.685
5hvn NAD3-dehydroquinate synthase / 0.673
1nvb NADPentafunctional AROM polypeptide / 0.661
1xaj NAD3-dehydroquinate synthase / 0.658
3zok NAD3-dehydroquinate synthase, chloroplastic 4.2.3.4 0.657
3clh NAD3-dehydroquinate synthase 4.2.3.4 0.656
1xag NAD3-dehydroquinate synthase / 0.654
3qbd NAD3-dehydroquinate synthase 4.2.3.4 0.653