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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nqm BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nqm BTNStreptavidin / 1.066
3ry2 BTNStreptavidin / 1.042
1mk5 BTNStreptavidin / 1.024
2izh BTNStreptavidin / 1.020
3wyq BTNStreptavidin / 1.020
2izf BTNStreptavidin / 1.019
2y3f BTNStreptavidin / 1.016
2izi BTNStreptavidin / 1.007
2izg BTNStreptavidin / 1.004
2rtg BTNStreptavidin / 0.995
2rtf BTNStreptavidin / 0.993
4gda BTNStreptavidin / 0.989
2rtd BTNStreptavidin / 0.983
1luq BTNStreptavidin / 0.980
1df8 BTNStreptavidin / 0.961
3wzn BTNStreptavidin / 0.957
1i9h BNIStreptavidin / 0.950
4dne DTBStreptavidin / 0.947
3rdo BTNStreptavidin / 0.943
2rte BTNStreptavidin / 0.942
1stp BTNStreptavidin / 0.935
2izj BTNStreptavidin / 0.932
4bx7 B4FStreptavidin / 0.929
3rdq DTBStreptavidin / 0.925
1n9m BTNStreptavidin / 0.916
4z28 BTNHoefavidin / 0.903
2izl IMIStreptavidin / 0.899
1lcw SHMStreptavidin / 0.889
1swt BTNStreptavidin / 0.885
1swr BTNStreptavidin / 0.881
3ew2 BTNHypothetical conserved protein / 0.874
2rtr IMIStreptavidin / 0.873
1mep BTNStreptavidin / 0.871
1rxh BNIStreptavidin / 0.864
1lcz BH7Streptavidin / 0.861
1rxj BNIStreptavidin / 0.860
1swp BTQStreptavidin / 0.860
2rtp IMIStreptavidin / 0.857
2uyw BTNAvd protein / 0.857
1swp BTNStreptavidin / 0.849
2fhl BNIAvidin-related protein 4/5 / 0.844
2rtm IMIStreptavidin / 0.842
2fhn BNIAvidin-related protein 4/5 / 0.841
2rtq IMIStreptavidin / 0.834
3t2w BTNAvidin/streptavidin / 0.832
1y52 BTNAvidin-related protein 4/5 / 0.831
2c4i BTNAvidin / 0.828
4bcs BTNAvidin-related protein 4/5 / 0.828
1n43 BTNStreptavidin / 0.818
1swn BTNStreptavidin / 0.816
2zsc BTNTamavidin2 / 0.816
1swg BTNStreptavidin / 0.806
3vhi VHIAvidin / 0.799
3wyp BSOStreptavidin / 0.787
4gd9 BTNStreptavidin / 0.780
1swe BTNStreptavidin / 0.778
2rtn IMIStreptavidin / 0.775
1ndj BTNStreptavidin / 0.756
2rtl IMIStreptavidin / 0.736
4yvb BTNStreptavidin / 0.729
1swd BTNStreptavidin / 0.718
2uz2 BTNAvd protein / 0.717
1nc9 IMIStreptavidin / 0.711
4bj8 BTNAvidin / 0.708
2avi BTNAvidin / 0.697
4dve BTNBiotin transporter BioY / 0.673
3vgw NVZAvidin / 0.653
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 0.652