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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nq0 4HY Thyroid hormone receptor beta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nq0 4HYThyroid hormone receptor beta / 1.140
3d57 4HYThyroid hormone receptor beta / 0.984
1nq1 4HYThyroid hormone receptor beta / 0.846
2pin 4HYThyroid hormone receptor beta / 0.846
1nax IH5Thyroid hormone receptor beta / 0.833
1nav IH5Thyroid hormone receptor alpha / 0.824
1r6g 442Thyroid hormone receptor beta / 0.716
1nq2 4HYThyroid hormone receptor beta / 0.698
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.655