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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nl4 HFP Protein farnesyltransferase subunit beta 2.5.1.58

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nl4 HFPProtein farnesyltransferase subunit beta 2.5.1.58 1.013
1ni1 HFPProtein farnesyltransferase subunit beta 2.5.1.58 0.847
1n95 HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha / 0.798
1n95 HFPProtein farnesyltransferase subunit beta 2.5.1.58 0.798
1qbq HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha / 0.788
1qbq HFPProtein farnesyltransferase subunit beta 2.5.1.58 0.788