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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngi ANP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngi ANPHeat shock cognate 71 kDa protein / 1.046
1nge ATPHeat shock cognate 71 kDa protein / 0.994
1ngj ANPHeat shock cognate 71 kDa protein / 0.991
1ngh ATPHeat shock cognate 71 kDa protein / 0.930
3ldo ANP78 kDa glucose-regulated protein / 0.904
5f1x ATP78 kDa glucose-regulated protein / 0.875
3ldl ATP78 kDa glucose-regulated protein / 0.869
1ngc ADPHeat shock cognate 71 kDa protein / 0.844
3hsc ADPHeat shock cognate 71 kDa protein / 0.843
1ngb ADPHeat shock cognate 71 kDa protein / 0.841
1ngd ADPHeat shock cognate 71 kDa protein / 0.841
1ats ADPHeat shock cognate 71 kDa protein / 0.819
2qwl ADPHeat shock cognate 71 kDa protein / 0.800
5f2r ACP78 kDa glucose-regulated protein / 0.786
3fe1 ADPHeat shock 70 kDa protein 6 / 0.785
1atr ADPHeat shock cognate 71 kDa protein / 0.770
2qwq ADPHeat shock cognate 71 kDa protein / 0.752
2qwr ANPHeat shock cognate 71 kDa protein / 0.741
2qwn ADPHeat shock cognate 71 kDa protein / 0.701
4b1v ATPActin, alpha skeletal muscle / 0.701
1qz5 ATPActin, alpha skeletal muscle / 0.700
3d2e ATPHeat shock protein homolog SSE1 / 0.694
4b9q ATPChaperone protein DnaK / 0.689
4h5t ADPHeat shock cognate 71 kDa protein / 0.685
1nlv ATPMajor actin / 0.676
4cbx ATPActin-2 / 0.670
4k41 ATPActin, alpha skeletal muscle / 0.664
1eqy ATPActin, alpha skeletal muscle / 0.663
1kp8 AGS60 kDa chaperonin / 0.662
3ule ATPActin-related protein 2 / 0.662
1c0f ATPMajor actin / 0.660
3chw ATPMajor actin / 0.658
3ffk ATPActin, alpha skeletal muscle / 0.656