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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngh ATP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngh ATPHeat shock cognate 71 kDa protein / 1.014
1nge ATPHeat shock cognate 71 kDa protein / 0.989
1ngj ANPHeat shock cognate 71 kDa protein / 0.947
1ngi ANPHeat shock cognate 71 kDa protein / 0.930
3ldo ANP78 kDa glucose-regulated protein / 0.923
5f1x ATP78 kDa glucose-regulated protein / 0.885
3ldl ATP78 kDa glucose-regulated protein / 0.865
1ngc ADPHeat shock cognate 71 kDa protein / 0.859
3hsc ADPHeat shock cognate 71 kDa protein / 0.859
1ngd ADPHeat shock cognate 71 kDa protein / 0.855
2qwl ADPHeat shock cognate 71 kDa protein / 0.831
1ats ADPHeat shock cognate 71 kDa protein / 0.825
1ngb ADPHeat shock cognate 71 kDa protein / 0.809
2qwq ADPHeat shock cognate 71 kDa protein / 0.787
5f2r ACP78 kDa glucose-regulated protein / 0.784
1atr ADPHeat shock cognate 71 kDa protein / 0.780
2qwn ADPHeat shock cognate 71 kDa protein / 0.779
2qwr ANPHeat shock cognate 71 kDa protein / 0.772
3fe1 ADPHeat shock 70 kDa protein 6 / 0.763
3w3d ATPActin, gamma-enteric smooth muscle / 0.704
4h5t ADPHeat shock cognate 71 kDa protein / 0.699
1nlv ATPMajor actin / 0.690
2a41 ATPActin, alpha skeletal muscle / 0.668
3ule ATPActin-related protein 2 / 0.666
4pl8 ATPActin, alpha skeletal muscle / 0.666
1ijj ATPActin, alpha skeletal muscle / 0.665
3ffk ATPActin, alpha skeletal muscle / 0.660
3el2 ATPActin-5C / 0.658
3a5m ATPMajor actin / 0.657
4b9q ATPChaperone protein DnaK / 0.655