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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngd ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngd ADPHeat shock cognate 71 kDa protein / 0.968
1ngc ADPHeat shock cognate 71 kDa protein / 0.940
3hsc ADPHeat shock cognate 71 kDa protein / 0.940
1ngb ADPHeat shock cognate 71 kDa protein / 0.926
1ngj ANPHeat shock cognate 71 kDa protein / 0.905
2qwl ADPHeat shock cognate 71 kDa protein / 0.902
1nge ATPHeat shock cognate 71 kDa protein / 0.889
1ats ADPHeat shock cognate 71 kDa protein / 0.873
1ngh ATPHeat shock cognate 71 kDa protein / 0.855
1ngi ANPHeat shock cognate 71 kDa protein / 0.841
2qwq ADPHeat shock cognate 71 kDa protein / 0.836
5f1x ATP78 kDa glucose-regulated protein / 0.824
2qwn ADPHeat shock cognate 71 kDa protein / 0.821
3ldo ANP78 kDa glucose-regulated protein / 0.820
2qwr ANPHeat shock cognate 71 kDa protein / 0.804
3fe1 ADPHeat shock 70 kDa protein 6 / 0.780
4h5t ADPHeat shock cognate 71 kDa protein / 0.771
5f2r ACP78 kDa glucose-regulated protein / 0.766
1atr ADPHeat shock cognate 71 kDa protein / 0.746
4b9q ATPChaperone protein DnaK / 0.722
4b1v ATPActin, alpha skeletal muscle / 0.719
3ldl ATP78 kDa glucose-regulated protein / 0.712
1yxq ATPActin, alpha skeletal muscle / 0.709
1nlv ATPMajor actin / 0.708
1qz5 ATPActin, alpha skeletal muscle / 0.708
4k41 ATPActin, alpha skeletal muscle / 0.707
1s22 ATPActin, alpha skeletal muscle / 0.705
1wua ATPActin, alpha skeletal muscle / 0.696
4pkg ATPActin, alpha skeletal muscle / 0.690
3m6g ATPActin, alpha skeletal muscle / 0.689
3w3d ATPActin, gamma-enteric smooth muscle / 0.685
3d2e ATPHeat shock protein homolog SSE1 / 0.682
3a5m ATPMajor actin / 0.675
2p9k ATPActin-related protein 2 / 0.669
1t44 ATPActin, alpha skeletal muscle / 0.668
1rgi ATPActin, alpha skeletal muscle / 0.666
3ule ATPActin-related protein 2 / 0.661
3m3z 3F5Heat shock cognate 71 kDa protein / 0.660
2q97 ATPActin, alpha skeletal muscle / 0.658
1nm1 ATPMajor actin / 0.657
4pl8 ATPActin, alpha skeletal muscle / 0.656