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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngc ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngc ADPHeat shock cognate 71 kDa protein / 0.967
3hsc ADPHeat shock cognate 71 kDa protein / 0.941
1ngd ADPHeat shock cognate 71 kDa protein / 0.940
1ngb ADPHeat shock cognate 71 kDa protein / 0.923
1ngj ANPHeat shock cognate 71 kDa protein / 0.906
1nge ATPHeat shock cognate 71 kDa protein / 0.892
3fe1 ADPHeat shock 70 kDa protein 6 / 0.867
1ngh ATPHeat shock cognate 71 kDa protein / 0.859
1ats ADPHeat shock cognate 71 kDa protein / 0.855
2qwl ADPHeat shock cognate 71 kDa protein / 0.848
1ngi ANPHeat shock cognate 71 kDa protein / 0.844
2qwq ADPHeat shock cognate 71 kDa protein / 0.818
5f2r ACP78 kDa glucose-regulated protein / 0.814
2qwn ADPHeat shock cognate 71 kDa protein / 0.812
1atr ADPHeat shock cognate 71 kDa protein / 0.805
3ldo ANP78 kDa glucose-regulated protein / 0.800
2qwr ANPHeat shock cognate 71 kDa protein / 0.785
5f1x ATP78 kDa glucose-regulated protein / 0.766
3ldl ATP78 kDa glucose-regulated protein / 0.762
4h5t ADPHeat shock cognate 71 kDa protein / 0.749
1nlv ATPMajor actin / 0.707
4b9q ATPChaperone protein DnaK / 0.694
1yxq ATPActin, alpha skeletal muscle / 0.687
3d2e ATPHeat shock protein homolog SSE1 / 0.682
3ule ATPActin-related protein 2 / 0.659
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.658
3m1f ATPActin, alpha skeletal muscle / 0.655
4ci6 ATPActin / 0.655