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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngb ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngb ADPHeat shock cognate 71 kDa protein / 0.968
1ngd ADPHeat shock cognate 71 kDa protein / 0.926
1ngc ADPHeat shock cognate 71 kDa protein / 0.923
3hsc ADPHeat shock cognate 71 kDa protein / 0.889
3fe1 ADPHeat shock 70 kDa protein 6 / 0.887
1nge ATPHeat shock cognate 71 kDa protein / 0.874
1ngj ANPHeat shock cognate 71 kDa protein / 0.872
1ats ADPHeat shock cognate 71 kDa protein / 0.866
2qwl ADPHeat shock cognate 71 kDa protein / 0.855
2qwn ADPHeat shock cognate 71 kDa protein / 0.847
1ngi ANPHeat shock cognate 71 kDa protein / 0.841
2qwq ADPHeat shock cognate 71 kDa protein / 0.819
3ldo ANP78 kDa glucose-regulated protein / 0.817
5f1x ATP78 kDa glucose-regulated protein / 0.813
1ngh ATPHeat shock cognate 71 kDa protein / 0.809
2qwr ANPHeat shock cognate 71 kDa protein / 0.802
1atr ADPHeat shock cognate 71 kDa protein / 0.790
5f2r ACP78 kDa glucose-regulated protein / 0.775
4h5t ADPHeat shock cognate 71 kDa protein / 0.772
3ldl ATP78 kDa glucose-regulated protein / 0.747
4b9q ATPChaperone protein DnaK / 0.730
1nlv ATPMajor actin / 0.728
3a5m ATPMajor actin / 0.713
1yxq ATPActin, alpha skeletal muscle / 0.698
4b1v ATPActin, alpha skeletal muscle / 0.693
1nm1 ATPMajor actin / 0.687
4k41 ATPActin, alpha skeletal muscle / 0.686
3m6g ATPActin, alpha skeletal muscle / 0.680
3w3d ATPActin, gamma-enteric smooth muscle / 0.674
3d2e ATPHeat shock protein homolog SSE1 / 0.668
3ule ATPActin-related protein 2 / 0.664
1wua ATPActin, alpha skeletal muscle / 0.650