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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nc9 IMI Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nc9 IMIStreptavidin / 1.064
2izl IMIStreptavidin / 0.967
2rto IMIStreptavidin / 0.945
2rtp IMIStreptavidin / 0.938
2rtq IMIStreptavidin / 0.924
2izh BTNStreptavidin / 0.898
3wyq BTNStreptavidin / 0.892
3wzn BTNStreptavidin / 0.890
1swt BTNStreptavidin / 0.886
2rtr IMIStreptavidin / 0.886
2izf BTNStreptavidin / 0.882
2izi BTNStreptavidin / 0.882
3ry2 BTNStreptavidin / 0.881
1i9h BNIStreptavidin / 0.878
2y3f BTNStreptavidin / 0.862
1mk5 BTNStreptavidin / 0.861
1mep BTNStreptavidin / 0.860
1ndj BTNStreptavidin / 0.857
4gda BTNStreptavidin / 0.856
1df8 BTNStreptavidin / 0.842
4dne DTBStreptavidin / 0.840
1swe BTNStreptavidin / 0.839
2rtn IMIStreptavidin / 0.839
1n43 BTNStreptavidin / 0.838
4bx7 B4FStreptavidin / 0.832
1luq BTNStreptavidin / 0.827
1lcz BH7Streptavidin / 0.815
3rdq DTBStreptavidin / 0.814
1swr BTNStreptavidin / 0.809
2rtm IMIStreptavidin / 0.808
1lcw SHMStreptavidin / 0.806
1n9m BTNStreptavidin / 0.801
4z28 BTNHoefavidin / 0.798
1stp BTNStreptavidin / 0.790
2zsc BTNTamavidin2 / 0.788
4gd9 BTNStreptavidin / 0.782
3wyp BSOStreptavidin / 0.775
4yvb BTNStreptavidin / 0.773
1swg BTNStreptavidin / 0.768
1swn BTNStreptavidin / 0.767
2rtl IMIStreptavidin / 0.761
3vhi VHIAvidin / 0.757
2c4i BTNAvidin / 0.740
3ew2 BTNHypothetical conserved protein / 0.734
1y52 BTNAvidin-related protein 4/5 / 0.731
2fhn BNIAvidin-related protein 4/5 / 0.729
1swp BTNStreptavidin / 0.726
1nqm BTNStreptavidin / 0.711
4ggz BTNBll1558 protein / 0.705
4bj8 BTNAvidin / 0.693
1swd BTNStreptavidin / 0.692
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.660
1rxj BNIStreptavidin / 0.659
2avi BTNAvidin / 0.658