Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n4q LYS_CYS_VAL_ILE_LEU Geranylgeranyl transferase type-1 subunit beta 2.5.1.59

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n4q LYS_CYS_VAL_ILE_LEUGeranylgeranyl transferase type-1 subunit beta 2.5.1.59 0.960
1n4s CYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta 2.5.1.59 0.777
1n4p CYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta 2.5.1.59 0.739