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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n43 BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n43 BTNStreptavidin / 1.044
1mk5 BTNStreptavidin / 0.999
3ry2 BTNStreptavidin / 0.998
1swe BTNStreptavidin / 0.983
2izf BTNStreptavidin / 0.982
3wyq BTNStreptavidin / 0.981
2y3f BTNStreptavidin / 0.977
2rtg BTNStreptavidin / 0.969
2izh BTNStreptavidin / 0.964
2izi BTNStreptavidin / 0.952
2zsc BTNTamavidin2 / 0.949
3wyp BSOStreptavidin / 0.949
2rtd BTNStreptavidin / 0.943
1luq BTNStreptavidin / 0.942
4gda BTNStreptavidin / 0.942
2izj BTNStreptavidin / 0.941
2rtf BTNStreptavidin / 0.937
2izg BTNStreptavidin / 0.932
1ndj BTNStreptavidin / 0.928
3rdo BTNStreptavidin / 0.925
2rte BTNStreptavidin / 0.924
4bx7 B4FStreptavidin / 0.924
4gd9 BTNStreptavidin / 0.924
1df8 BTNStreptavidin / 0.923
1n9m BTNStreptavidin / 0.921
3wzn BTNStreptavidin / 0.921
1i9h BNIStreptavidin / 0.920
3rdq DTBStreptavidin / 0.918
4dne DTBStreptavidin / 0.911
1swt BTNStreptavidin / 0.892
2izl IMIStreptavidin / 0.888
4yvb BTNStreptavidin / 0.877
2rtr IMIStreptavidin / 0.872
1swg BTNStreptavidin / 0.868
2rtp IMIStreptavidin / 0.868
4z28 BTNHoefavidin / 0.866
1lcw SHMStreptavidin / 0.863
1stp BTNStreptavidin / 0.862
1swr BTNStreptavidin / 0.856
1rxj BNIStreptavidin / 0.853
2rto IMIStreptavidin / 0.851
2uyw BTNAvd protein / 0.850
1swd BTNStreptavidin / 0.846
1nc9 IMIStreptavidin / 0.838
1rxh BNIStreptavidin / 0.837
2fhl BNIAvidin-related protein 4/5 / 0.835
2fhn BNIAvidin-related protein 4/5 / 0.834
2rtm IMIStreptavidin / 0.828
4bcs BTNAvidin-related protein 4/5 / 0.820
1nqm BTNStreptavidin / 0.818
3ew2 BTNHypothetical conserved protein / 0.817
1mep BTNStreptavidin / 0.811
2c4i BTNAvidin / 0.805
3vgw NVZAvidin / 0.799
3t2w BTNAvidin/streptavidin / 0.794
2rtq IMIStreptavidin / 0.793
1swp BTQStreptavidin / 0.784
1swn BTNStreptavidin / 0.762
1swp BTNStreptavidin / 0.760
2jgs BTNAvidin / 0.759
4bj8 BTNAvidin / 0.758
2rtn IMIStreptavidin / 0.757
3vhi VHIAvidin / 0.729
4ggz BTNBll1558 protein / 0.722
2rtl IMIStreptavidin / 0.715
1ij8 BNIAvidin / 0.693
2uz2 BTNAvd protein / 0.679
1lcz BH7Streptavidin / 0.677
2avi BTNAvidin / 0.653