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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n3s GTP GTP cyclohydrolase 1 3.5.4.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n3s GTPGTP cyclohydrolase 1 3.5.4.16 1.120
1a8r GTPGTP cyclohydrolase 1 3.5.4.16 0.921
1a9c GTPGTP cyclohydrolase 1 3.5.4.16 0.898
1n3r GTPGTP cyclohydrolase 1 3.5.4.16 0.891
1wuq 8GTGTP cyclohydrolase 1 / 0.795
4du6 GTPGTP cyclohydrolase 1 / 0.744
1wur 8DGGTP cyclohydrolase 1 / 0.714
4a5l NDPThioredoxin reductase / 0.656
1pno NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.655
4b45 GSPTubulin-like protein CetZ2 / 0.651