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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n1d C2G Glycerol-3-phosphate cytidylyltransferase 2.7.7.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n1d C2GGlycerol-3-phosphate cytidylyltransferase 2.7.7.39 1.311
3hl4 CDCCholine-phosphate cytidylyltransferase A / 0.773
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.704
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.676
3elb C5PEthanolamine-phosphate cytidylyltransferase 2.7.7.14 0.662
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.662
2v51 ATPActin, alpha skeletal muscle / 0.656
1xbt TTPThymidine kinase, cytosolic 2.7.1.21 0.655
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.653