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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mu8 CDB Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mu8 CDBProthrombin 3.4.21.5 1.004
1z71 L17Prothrombin 3.4.21.5 0.914
1mue CDDProthrombin 3.4.21.5 0.910
1sl3 170Prothrombin 3.4.21.5 0.906
1mu6 CDAProthrombin 3.4.21.5 0.897
2r2m I50Prothrombin 3.4.21.5 0.825
3c1k T15Prothrombin 3.4.21.5 0.812
1nm6 L86Prothrombin 3.4.21.5 0.792
2bxt C2DProthrombin 3.4.21.5 0.781
3c27 DKKProthrombin 3.4.21.5 0.749
4e5i 0N9Polymerase acidic protein / 0.744
1nt1 T76Prothrombin 3.4.21.5 0.729
2zgb 21UProthrombin 3.4.21.5 0.723
4bao MVFProthrombin 3.4.21.5 0.723
1ta2 176Prothrombin 3.4.21.5 0.707
1uvs I11Prothrombin 3.4.21.5 0.704
4e7r 0NWProthrombin 3.4.21.5 0.700
1k22 MELProthrombin 3.4.21.5 0.699
4bah MELProthrombin 3.4.21.5 0.698
4bak M67Prothrombin 3.4.21.5 0.694
1ta6 177Prothrombin 3.4.21.5 0.693
2zdv 37UProthrombin 3.4.21.5 0.690
3f68 91UProthrombin 3.4.21.5 0.689
3qwc 98PProthrombin 3.4.21.5 0.688
2zf0 51UProthrombin 3.4.21.5 0.685
3dhk 23UProthrombin 3.4.21.5 0.683
1ype UIPProthrombin 3.4.21.5 0.680
1c4v IH2Prothrombin 3.4.21.5 0.677
4bam MM9Prothrombin 3.4.21.5 0.677
4ban M6SProthrombin 3.4.21.5 0.676
1o0d 163Prothrombin 3.4.21.5 0.675
3utu 1TSProthrombin 3.4.21.5 0.674
1ypl RA8Prothrombin 3.4.21.5 0.671
2znk 31UProthrombin 3.4.21.5 0.669
2zc9 22UProthrombin 3.4.21.5 0.668
4baq M4ZProthrombin 3.4.21.5 0.666
3eq0 2TSProthrombin 3.4.21.5 0.665
2zfp 19UProthrombin 3.4.21.5 0.663
2zfq 45UProthrombin 3.4.21.5 0.663
1afe ALZProthrombin 3.4.21.5 0.659
1zrb 062Prothrombin 3.4.21.5 0.658
3dux 64UProthrombin 3.4.21.5 0.655
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.654
2zda 32UProthrombin 3.4.21.5 0.653
2cn0 F25Prothrombin 3.4.21.5 0.650