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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mu6 CDA Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mu6 CDAProthrombin 3.4.21.5 0.978
1z71 L17Prothrombin 3.4.21.5 0.906
1mu8 CDBProthrombin 3.4.21.5 0.897
1sl3 170Prothrombin 3.4.21.5 0.885
1mue CDDProthrombin 3.4.21.5 0.873
2r2m I50Prothrombin 3.4.21.5 0.832
1nm6 L86Prothrombin 3.4.21.5 0.827
3c1k T15Prothrombin 3.4.21.5 0.798
2bxt C2DProthrombin 3.4.21.5 0.762
3c27 DKKProthrombin 3.4.21.5 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1nt1 T76Prothrombin 3.4.21.5 0.723
4bah MELProthrombin 3.4.21.5 0.698
1k22 MELProthrombin 3.4.21.5 0.697
4bao MVFProthrombin 3.4.21.5 0.683
3f68 91UProthrombin 3.4.21.5 0.673
3utu 1TSProthrombin 3.4.21.5 0.669
4e7r 0NWProthrombin 3.4.21.5 0.668
2znk 31UProthrombin 3.4.21.5 0.667
4baq M4ZProthrombin 3.4.21.5 0.665
1o0d 163Prothrombin 3.4.21.5 0.664
2zfq 45UProthrombin 3.4.21.5 0.664
1t4v 14AProthrombin 3.4.21.5 0.663
4ban M6SProthrombin 3.4.21.5 0.660
1uvs I11Prothrombin 3.4.21.5 0.659
1ype UIPProthrombin 3.4.21.5 0.659
1zgi 382Prothrombin 3.4.21.5 0.659
4bak M67Prothrombin 3.4.21.5 0.659
1ta6 177Prothrombin 3.4.21.5 0.654
1k21 IGNProthrombin 3.4.21.5 0.653