Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mp5 UPG Glucose-1-phosphate thymidylyltransferase 2.7.7.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mp5 UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 1.240
1mp4 UPGGlucose-1-phosphate thymidylyltransferase / 0.821
4ho5 DAUGlucose-1-phosphate thymidylyltransferase / 0.683
4ho6 UPGGlucose-1-phosphate thymidylyltransferase / 0.670
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.666
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.662
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.662
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.659
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.655
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.650